@article{adachi-2007-stem-cells,
  title = {β-Catenin Signaling Promotes Proliferation of Progenitor Cells in the Adult Mouse Subventricular Zone},
  author = {Adachi, K. and Mirzadeh, Z. and Sakaguchi, M. and Yamashita, T. and Nikolcheva, T. and Gotoh, Y. and Peltz, G. and Gong, L. and Kawase, T. and Alvarez-Buylla, A. and Okano, H. and Sawamoto, K.},
  journal = {Stem Cells},
  year = {2007},
  volume = {25},
  number = {11},
  pages = {2827--2836},
  doi = {10.1634/stemcells.2007-0177},
  url = {https://doi.org/10.1634/stemcells.2007-0177},
  pmid = {17673525}
}

@article{akers-2010-jneurosci,
  title = {Functional Contribution of Adult-Generated Olfactory Bulb Interneurons: Odor Discrimination versus Odor Memory: Table 1.},
  author = {Akers, K. G. and Sakaguchi, M. and Arruda-Carvalho, M.},
  journal = {The Journal of Neuroscience},
  year = {2010},
  volume = {30},
  number = {13},
  pages = {4523--4525},
  doi = {10.1523/JNEUROSCI.0443-10.2010},
  url = {https://doi.org/10.1523/JNEUROSCI.0443-10.2010},
  pmid = {20357101}
}

@article{akers-2018-stemcells,
  title = {Concise Review: Regulatory Influence of Sleep and Epigenetics on Adult Hippocampal Neurogenesis and Cognitive and Emotional Function},
  author = {Akers, K. G. and Chérasse, Y. and Fujita, Y. and Srinivasan, S. and Sakurai, T. and Sakaguchi, M.},
  journal = {Stem Cells},
  year = {2018},
  volume = {36},
  number = {7},
  pages = {969--976},
  doi = {10.1002/stem.2815},
  url = {https://doi.org/10.1002/stem.2815}
}

@article{arai-2025-jneurosci,
  title = {Diverse Firing Profiles of Crhbp-positive Neurons in the Dorsal Pons Suggestive of Their Pleiotropic Roles in REM Sleep Regulation in Mice},
  author = {Arai, Y. and Kashiwagi, M. and Kanda, T. and Koyanagi, I. and Sakaguchi, M. and Yanagisawa, M. and Koyama, Y. and Hayashi, Y.},
  journal = {The Journal of Neuroscience},
  year = {2025},
  volume = {45},
  number = {28},
  pages = {e2365242025},
  doi = {10.1523/JNEUROSCI.2365-24.2025},
  url = {https://doi.org/10.1523/JNEUROSCI.2365-24.2025},
  pmid = {40550695}
}

@article{arruda-carvalho-2011-jneurosci,
  title = {Posttraining Ablation of Adult-Generated Neurons Degrades Previously Acquired Memories},
  author = {Arruda-Carvalho, M. and Sakaguchi, M. and Akers, K. G. and Josselyn, S. A. and Frankland, P. W.},
  journal = {The Journal of Neuroscience},
  year = {2011},
  volume = {31},
  number = {42},
  pages = {15113--15127},
  doi = {10.1523/JNEUROSCI.3432-11.2011},
  url = {https://doi.org/10.1523/JNEUROSCI.3432-11.2011},
  pmid = {22016545}
}

@article{arruda-carvalho-2014-jneurosci,
  title = {Posttraining Ablation of Adult-Generated Olfactory Granule Cells Degrades Odor–Reward Memories},
  author = {Arruda-Carvalho, M. and Akers, K. G. and Guskjolen, A. and Sakaguchi, M. and Josselyn, S. A. and Frankland, P. W.},
  journal = {The Journal of Neuroscience},
  year = {2014},
  volume = {34},
  number = {47},
  pages = {15793--15803},
  doi = {10.1523/JNEUROSCI.2336-13.2014},
  url = {https://doi.org/10.1523/JNEUROSCI.2336-13.2014},
  pmid = {25411506}
}

@article{carrier-ruiz-2021-star-protocols,
  title = {Calcium imaging of adult-born neurons in freely moving mice},
  author = {Carrier-Ruiz, A. and Sugaya, Y. and Kumar, D. and Vergara, P. and Koyanagi, I. and Srinivasan, S. and Naoi, T. and Kano, M. and Sakaguchi, M.},
  journal = {STAR Protocols},
  year = {2021},
  volume = {2},
  number = {1},
  pages = {100238},
  doi = {10.1016/j.xpro.2020.100238},
  url = {https://doi.org/10.1016/j.xpro.2020.100238},
  pmid = {33458703}
}

@article{chavan-2025-neurobiol-learn-mem,
  title = {Memory processing by hippocampal adult-born neurons},
  author = {Chavan, P. and Kitamura, T. and Sakaguchi, M.},
  journal = {Neurobiology of Learning and Memory},
  year = {2025},
  volume = {220},
  pages = {108062},
  doi = {10.1016/j.nlm.2025.108062},
  url = {https://doi.org/10.1016/j.nlm.2025.108062},
  pmid = {40345378}
}

@inproceedings{chen-2025-embc,
  title = {Classification of Global Brain States by Resampling and Data Augmentation of EEG},
  author = {Chen, J. and Koyanagi, I. and Sakaguchi, M. and Tezuka, T.},
  booktitle = {2025 47th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)},
  year = {2025},
  pages = {1--7},
  doi = {10.1109/EMBC58623.2025.11253414},
  url = {https://doi.org/10.1109/EMBC58623.2025.11253414},
  pmid = {41336586}
}

@article{frankland-2008-molbrain,
  title = {Starting at the endophenotype: A role for alpha-CaMKII in schizophrenia?},
  author = {Frankland, P. W. and Sakaguchi, M. and Arruda-Carvalho, M.},
  journal = {Molecular Brain},
  year = {2008},
  volume = {1},
  number = {1},
  pages = {5},
  doi = {10.1186/1756-6606-1-5},
  url = {https://doi.org/10.1186/1756-6606-1-5},
  pmid = {18803858}
}

@article{fujinaka-2016-molbrain,
  title = {Effect of context exposure after fear learning on memory generalization in mice},
  author = {Fujinaka, A. and Li, R. and Hayashi, M. and Kumar, D. and Changarathil, G. and Naito, K. and Miki, K. and Nishiyama, T. and Lazarus, M. and Sakurai, T. and Kee, N. and Nakajima, S. and Wang, S. H. and Sakaguchi, M.},
  journal = {Molecular Brain},
  year = {2016},
  volume = {9},
  number = {1},
  pages = {2},
  doi = {10.1186/s13041-015-0184-0},
  url = {https://doi.org/10.1186/s13041-015-0184-0},
  pmid = {26745987}
}

@inproceedings{he-2024-embc,
  title = {Real-time detection of motifs from semi-synthetic calcium imaging data with various noise types},
  author = {He, Z. and Vergara, P. and Sakaguchi, M. and Tezuka, T.},
  booktitle = {2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)},
  year = {2024},
  pages = {1--7},
  doi = {10.1109/EMBC53108.2024.10782461},
  url = {https://doi.org/10.1109/EMBC53108.2024.10782461},
  pmid = {40039703}
}

@article{hirota-2010-development,
  title = {Planar polarity of multiciliated ependymal cells involves the anterior migration of basal bodies regulated by non-muscle myosin II},
  author = {Hirota, Y. and Meunier, A. and Huang, S. and Shimozawa, T. and Yamada, O. and Kida, Y. S. and Inoue, M. and Ito, T. and Kato, H. and Sakaguchi, M. and Sunabori, T. and Nakaya, M. A. and Nonaka, S. and Ogura, T. and Higuchi, H. and Okano, H. and Spassky, N. and Sawamoto, K.},
  journal = {Development},
  year = {2010},
  volume = {137},
  number = {18},
  pages = {3037--3046},
  doi = {10.1242/dev.050120},
  url = {https://doi.org/10.1242/dev.050120},
  pmid = {20685736}
}

@article{hirota-2012-stem-cells,
  title = {Roles of Planar Cell Polarity Signaling in Maturation of Neuronal Precursor Cells in the Postnatal Mouse Olfactory Bulb},
  author = {Hirota, Y. and Sawada, M. and Kida, Y. S. and Huang, S. H. and Yamada, O. and Sakaguchi, M. and Ogura, T. and Okano, H. and Sawamoto, K.},
  journal = {STEM CELLS},
  year = {2012},
  volume = {30},
  number = {8},
  pages = {1726--1733},
  doi = {10.1002/stem.1137},
  url = {https://doi.org/10.1002/stem.1137},
  pmid = {22628050}
}

@article{ikeda-2010-stem-cells,
  title = {Expression and Proliferation-Promoting Role of Diversin in the Neuronally Committed Precursor Cells Migrating in the Adult Mouse Brain},
  author = {Ikeda, M. and Hirota, Y. and Sakaguchi, M. and Yamada, O. and Kida, Y. S. and Ogura, T. and Otsuka, T. and Okano, H. and Sawamoto, K.},
  journal = {Stem Cells},
  year = {2010},
  volume = {28},
  number = {11},
  pages = {2017--2026},
  doi = {10.1002/stem.516},
  url = {https://doi.org/10.1002/stem.516},
  pmid = {20827749}
}

@article{imaizumi-2011-mol-brain,
  title = {Galectin-1 is expressed in early-type neural progenitor cells and down-regulates neurogenesis in the adult hippocampus},
  author = {Imaizumi, Y. and Sakaguchi, M. and Morishita, T. and Ito, M. and Poirier, F. and Sawamoto, K. and Okano, H.},
  journal = {Molecular Brain},
  year = {2011},
  volume = {4},
  number = {1},
  pages = {7},
  doi = {10.1186/1756-6606-4-7},
  url = {https://doi.org/10.1186/1756-6606-4-7},
  pmid = {21269521}
}

@misc{ino-2026-medrxiv,
  title = {Sound Exposure During Sleep (SES) in PTSD Patients: An Open-Label Feasibility Study},
  author = {Ino, K. and Zempo, K. and Hori, A. and Maruyama, T. and Tominaga, M. and Sugaya, Y. and Oba, M. and Yamauchi, Y. and Sato, L. and Sekiba, H. and Kawakami, C. and Bachman, G. and Waki, I. and Kitagawa, H. and Yanagisawa, M. and Kim, Y. and Sakaguchi, M.},
  howpublished = {medRxiv},
  year = {2026},
  doi = {10.64898/2026.05.02.26352243},
  url = {https://medrxiv.org/cgi/content/short/2026.05.02.26352243v1},
  note = {Preprint, not peer reviewed}
}

@article{ishibashi-2004-j-neurosci-res,
  title = {Human neural stem/progenitor cells, expanded in long‐term neurosphere culture, promote functional recovery after focal ischemia in Mongolian gerbils},
  author = {Ishibashi, S. and Sakaguchi, M. and Kuroiwa, T. and Yamasaki, M. and Kanemura, Y. and Shizuko, I. and Shimazaki, T. and Onodera, M. and Okano, H. and Mizusawa, H.},
  journal = {Journal of Neuroscience Research},
  year = {2004},
  volume = {78},
  number = {2},
  pages = {215--223},
  doi = {10.1002/jnr.20246},
  url = {https://doi.org/10.1002/jnr.20246},
  pmid = {15378509}
}

@article{ishibashi-2007-expneurol,
  title = {Galectin-1 regulates neurogenesis in the subventricular zone and promotes functional recovery after stroke},
  author = {Ishibashi, S. and Kuroiwa, T. and Sakaguchi, M. and Sun, L. and Kadoya, T. and Okano, H. and Mizusawa, H.},
  journal = {Experimental Neurology},
  year = {2007},
  volume = {207},
  number = {2},
  pages = {302--313},
  doi = {10.1016/j.expneurol.2007.06.024},
  url = {https://doi.org/10.1016/j.expneurol.2007.06.024},
  pmid = {17706645}
}

@article{kashiwagi-2024-cell,
  title = {A pontine-medullary loop crucial for REM sleep and its deficit in Parkinson’s disease},
  author = {Kashiwagi, M. and Beck, G. and Kanuka, M. and Arai, Y. and Tanaka, K. and Tatsuzawa, C. and Koga, Y. and Saito, Y. C. and Takagi, M. and Oishi, Y. and Sakaguchi, M. and Baba, K. and Ikuno, M. and Yamakado, H. and Takahashi, R. and Yanagisawa, M. and Murayama, S. and Sakurai, T. and Sakai, K. and Nakagawa, Y. and Watanabe, M. and Mochizuki, H. and Hayashi, Y.},
  journal = {Cell},
  year = {2024},
  volume = {187},
  number = {22},
  pages = {6272--6289.e21},
  doi = {10.1016/j.cell.2024.08.046},
  url = {https://doi.org/10.1016/j.cell.2024.08.046},
  pmid = {39303715}
}

@article{kawakami-2024-bbrc,
  title = {Spaced conditioned stimulus presentation facilitates the extinction of strong fear memory in mice},
  author = {Kawakami, C. and Naoi, T. and Sakaguchi, M.},
  journal = {Biochemical and Biophysical Research Communications},
  year = {2024},
  volume = {718},
  pages = {150071},
  doi = {10.1016/j.bbrc.2024.150071},
  url = {https://doi.org/10.1016/j.bbrc.2024.150071},
  pmid = {38735136}
}

@inproceedings{koyama-2024-fuzzieee,
  title = {A Noise-Robust Approach to Estimate Dimension of Sleep EEG in Mice Using Permutation Entropy},
  author = {Koyama, K. and Sakaguchi, M. and Ohnishi, T.},
  booktitle = {2024 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE)},
  year = {2024},
  pages = {1--8},
  doi = {10.1109/FUZZ-IEEE60900.2024.10611847},
  url = {https://doi.org/10.1109/FUZZ-IEEE60900.2024.10611847}
}

@article{koyanagi-2019-neural-regen-res,
  title = {Memory consolidation during sleep and adult hippocampal neurogenesis},
  author = {Koyanagi, I. and Akers, K. G. and Vergara, P. and Srinivasan, S. and Sakurai, T. and Sakaguchi, M.},
  journal = {Neural Regeneration Research},
  year = {2019},
  volume = {14},
  number = {1},
  pages = {20--23},
  doi = {10.4103/1673-5374.243695},
  url = {https://doi.org/10.4103/1673-5374.243695},
  pmid = {30531064}
}

@article{koyanagi-2021-molbrain,
  title = {Metabolic fingerprints of fear memory consolidation during sleep},
  author = {Koyanagi, I. and Sonomura, K. and Naoi, T. and Ohnishi, T. and Kaneko, N. and Sawamoto, K. and {Sato T-A} and Sakaguchi, M.},
  journal = {Molecular Brain},
  year = {2021},
  volume = {14},
  number = {1},
  pages = {30},
  doi = {10.1186/s13041-021-00733-6},
  url = {https://doi.org/10.1186/s13041-021-00733-6},
  pmid = {33568175}
}

@article{koyanagi-2023-neurosci-res,
  title = {Fully automatic REM sleep stage-specific intervention systems using single EEG in mice},
  author = {Koyanagi, I. and Tezuka, T. and Yu, J. and Srinivasan, S. and Naoi, T. and Yasugaki, S. and Nakai, A. and Taniguchi, S. and Hayashi, Y. and Nakano, Y. and Sakaguchi, M.},
  journal = {Neuroscience Research},
  year = {2023},
  volume = {186},
  pages = {51--58},
  doi = {10.1016/j.neures.2022.10.001},
  url = {https://doi.org/10.1016/j.neures.2022.10.001},
  pmid = {36206953}
}

@article{kumar-2020-neuron,
  title = {Sparse Activity of Hippocampal Adult-Born Neurons during REM Sleep Is Necessary for Memory Consolidation},
  author = {Kumar, D. and Koyanagi, I. and Carrier-Ruiz, A. and Vergara, P. and Srinivasan, S. and Sugaya, Y. and Kasuya, M. and Yu, T. S. and Vogt, K. E. and Muratani, M. and Ohnishi, T. and Singh, S. and Teixeira, C. M. and Chérasse, Y. and Naoi, T. and Wang, S. H. and Nondhalee, P. and Osman, B. A. H. and Kaneko, N. and Sawamoto, K. and Kernie, S. G. and Sakurai, T. and McHugh, T. J. and Kano, M. and Yanagisawa, M. and Sakaguchi, M.},
  journal = {Neuron},
  year = {2020},
  volume = {107},
  number = {3},
  pages = {552--565.e10},
  doi = {10.1016/j.neuron.2020.05.008},
  url = {https://doi.org/10.1016/j.neuron.2020.05.008},
  pmid = {32502462}
}

@article{leslie-2011-transl-psychiatry,
  title = {Impact of early adverse experience on complexity of adult-generated neurons},
  author = {Leslie, A. T. and Akers, K. G. and Krakowski, A. D. and Stone, S. S. D. and Sakaguchi, M. and Arruda-Carvalho, M. and Frankland, P. W.},
  journal = {Translational Psychiatry},
  year = {2011},
  volume = {1},
  number = {8},
  pages = {e35},
  doi = {10.1038/tp.2011.38},
  url = {https://doi.org/10.1038/tp.2011.38},
  pmid = {22832609}
}

@article{li-2024-natcommun,
  title = {Distinct ventral hippocampal inhibitory microcircuits regulating anxiety and fear behaviors},
  author = {Li, K. and Koukoutselos, K. and Sakaguchi, M. and Ciocchi, S.},
  journal = {Nature Communications},
  year = {2024},
  volume = {15},
  number = {1},
  pages = {8228},
  doi = {10.1038/s41467-024-52466-4},
  url = {https://doi.org/10.1038/s41467-024-52466-4},
  pmid = {39300067}
}

@article{maezono-2020-eneuro,
  title = {Progressive Changes in Sleep and Its Relations to Amyloid-β Distribution and Learning in Single App Knock-In Mice},
  author = {Maezono, S. E. B. and Kanuka, M. and Tatsuzawa, C. and Morita, M. and Kawano, T. and Kashiwagi, M. and Nondhalee, P. and Sakaguchi, M. and Saito, T. and Saido, T. C. and Hayashi, Y.},
  journal = {eNeuro},
  year = {2020},
  volume = {7},
  number = {2},
  pages = {ENEURO.0093--20.2020},
  doi = {10.1523/eneuro.0093-20.2020},
  url = {https://doi.org/10.1523/eneuro.0093-20.2020},
  pmid = {32321771}
}

@article{mikami-2004-j-neurosci-res,
  title = {Implantation of dendritic cells in injured adult spinal cord results in activation of endogenous neural stem/progenitor cells leading to de novo neurogenesis and functional recovery},
  author = {Mikami, Y. and Okano, H. and Sakaguchi, M. and Nakamura, M. and Shimazaki, T. and Okano, H. J. and Kawakami, Y. and Toyama, Y. and Toda, M.},
  journal = {Journal of Neuroscience Research},
  year = {2004},
  volume = {76},
  number = {4},
  pages = {453--465},
  doi = {10.1002/jnr.20086},
  url = {https://doi.org/10.1002/jnr.20086},
  pmid = {15114617}
}

@article{nagai-2026-jove,
  title = {Method for Selective REM Sleep Deprivation using The Selective Nose Flicking for Forgetting REM (SNiFFer)},
  author = {Nagai, K. and Koyanagi, I. and Kawakami, C. and Chavan, P. and Wang, Y. and Naoi, T. and Tezuka, T. and Sakaguchi, M.},
  journal = {Journal of Visualized Experiments},
  year = {2026},
  number = {230},
  doi = {10.3791/69042},
  url = {https://doi.org/10.3791/69042},
  pmid = {42113802}
}

@article{ohba-2004-neurosci-lett,
  title = {Sox21 is a repressor of neuronal differentiation and is antagonized by YB-1},
  author = {Ohba, H. and Chiyoda, T. and Endo, E. and Yano, M. and Hayakawa, Y. and Sakaguchi, M. and Darnell, R. B. and Okano, H. J. and Okano, H.},
  journal = {Neuroscience Letters},
  year = {2004},
  volume = {358},
  number = {3},
  pages = {157--160},
  doi = {10.1016/j.neulet.2004.01.026},
  url = {https://doi.org/10.1016/j.neulet.2004.01.026},
  pmid = {15039105}
}

@article{ohba-2021-neural-regen-res,
  title = {Contribution of adult-born neurons to memory consolidation during rapid eye movement sleep},
  author = {Ohba, A. and Sakaguchi, M.},
  journal = {Neural Regeneration Research},
  year = {2021},
  volume = {17},
  number = {2},
  pages = {307--308},
  doi = {10.4103/1673-5374.317966},
  url = {https://doi.org/10.4103/1673-5374.317966},
  pmid = {34269194}
}

@incollection{okano-2006-tissue-stem-cells,
  title = {Neural stem cells: Isolation and self-renewal},
  author = {Okano, H. and Kohyama, J. and Ohba, H. and Sakaguchi, M. and Tokunaga, A. and Shimazaki, T. and Okano, H. J.},
  booktitle = {Tissue Stem Cells},
  year = {2006}
}

@article{okano-2007-j-neurochem,
  title = {Regeneration of the central nervous system using endogenous repair mechanisms},
  author = {Okano, H. and Sakaguchi, M. and Ohki, K. and Suzuki, N. and Sawamoto, K.},
  journal = {Journal of Neurochemistry},
  year = {2007},
  volume = {102},
  number = {5},
  pages = {1459--1465},
  doi = {10.1111/j.1471-4159.2007.04674.x},
  url = {https://doi.org/10.1111/j.1471-4159.2007.04674.x},
  pmid = {17697047}
}

@article{purple-2017-scirep,
  title = {Auditory conditioned stimulus presentation during NREM sleep impairs fear memory in mice},
  author = {Purple, R. J. and Sakurai, T. and Sakaguchi, M.},
  journal = {Scientific Reports},
  year = {2017},
  volume = {7},
  number = {1},
  pages = {46247},
  doi = {10.1038/srep46247},
  url = {https://doi.org/10.1038/srep46247},
  pmid = {28401950}
}

@article{sakaguchi-2005-inflamm-regen,
  title = {A method for gene transfer, single isolation and in vitro assay for neural stem cells},
  author = {Sakaguchi, M. and Sawamoto, K. and Shimazaki, T. and Kitamura, T. and Shibuya, A. and Okano, H.},
  journal = {Inflammation and Regeneration},
  year = {2005},
  volume = {25},
  number = {1},
  pages = {50--54},
  doi = {10.2492/jsir.25.50},
  url = {https://doi.org/10.2492/jsir.25.50}
}

@article{sakaguchi-2006-pnas,
  title = {A carbohydrate-binding protein, Galectin-1, promotes proliferation of adult neural stem cells},
  author = {Sakaguchi, M. and Shingo, T. and Shimazaki, T. and Okano, H. J. and Shiwa, M. and Ishibashi, S. and Oguro, H. and Ninomiya, M. and Kadoya, T. and Horie, H. and Shibuya, A. and Mizusawa, H. and Poirier, F. and Nakauchi, H. and Sawamoto, K. and Okano, H.},
  journal = {Proceedings of the National Academy of Sciences},
  year = {2006},
  volume = {103},
  number = {18},
  pages = {7112--7117},
  doi = {10.1073/pnas.0508793103},
  url = {https://doi.org/10.1073/pnas.0508793103},
  pmid = {16636291}
}

@article{sakaguchi-2007-cell-mol-life-sci,
  title = {Expression and function of galectin-1 in adult neural stem cells},
  author = {Sakaguchi, M. and Imaizumi, Y. and Okano, H.},
  journal = {Cellular and Molecular Life Sciences},
  year = {2007},
  volume = {64},
  number = {10},
  pages = {1254--1258},
  doi = {10.1007/s00018-007-6476-5},
  url = {https://doi.org/10.1007/s00018-007-6476-5},
  pmid = {17364145}
}

@article{sakaguchi-2010-j-neurochem,
  title = {Regulation of adult neural progenitor cells by Galectin‐1/β1 Integrin interaction},
  author = {Sakaguchi, M. and Imaizumi, Y. and Shingo, T. and Tada, H. and Hayama, K. and Yamada, O. and Morishita, T. and Kadoya, T. and Uchiyama, N. and Shimazaki, T. and Kuno, A. and Poirier, F. and Hirabayashi, J. and Sawamoto, K. and Okano, H.},
  journal = {Journal of Neurochemistry},
  year = {2010},
  volume = {113},
  number = {6},
  pages = {1516--1524},
  doi = {10.1111/j.1471-4159.2010.06712.x},
  url = {https://doi.org/10.1111/j.1471-4159.2010.06712.x},
  pmid = {20367753}
}

@article{sakaguchi-2011-mol-brain,
  title = {Impaired spatial and contextual memory formation in galectin-1 deficient mice},
  author = {Sakaguchi, M. and Arruda-Carvalho, M. and Kang, N. H. and Imaizumi, Y. and Poirier, F. and Okano, H. and Frankland, P. W.},
  journal = {Molecular Brain},
  year = {2011},
  volume = {4},
  number = {1},
  pages = {33},
  doi = {10.1186/1756-6606-4-33},
  url = {https://doi.org/10.1186/1756-6606-4-33},
  pmid = {21884595}
}

@article{sakaguchi-2012-dev-neurobiol,
  title = {Neural stem cells, adult neurogenesis, and galectin‐1: From bench to bedside},
  author = {Sakaguchi, M. and Okano, H.},
  journal = {Developmental Neurobiology},
  year = {2012},
  volume = {72},
  number = {7},
  pages = {1059--1067},
  doi = {10.1002/dneu.22023},
  url = {https://doi.org/10.1002/dneu.22023},
  pmid = {22488739}
}

@article{sakaguchi-2012-molbrain,
  title = {Catching the engram: strategies to examine the memory trace},
  author = {Sakaguchi, M. and Hayashi, Y.},
  journal = {Molecular Brain},
  year = {2012},
  volume = {5},
  number = {1},
  pages = {32},
  doi = {10.1186/1756-6606-5-32},
  url = {https://doi.org/10.1186/1756-6606-5-32},
  pmid = {22999350}
}

@article{sakaguchi-2015-plos-one,
  title = {Inhibiting the Activity of CA1 Hippocampal Neurons Prevents the Recall of Contextual Fear Memory in Inducible ArchT Transgenic Mice},
  author = {Sakaguchi, M. and Kim, K. and Yu, L. M. Y. and Hashikawa, Y. and Sekine, Y. and Okumura, Y. and Kawano, M. and Hayashi, M. and Kumar, D. and Boyden, E. S. and McHugh, T. J. and Hayashi, Y.},
  journal = {PLOS ONE},
  year = {2015},
  volume = {10},
  number = {6},
  pages = {e0130163},
  doi = {10.1371/journal.pone.0130163},
  url = {https://doi.org/10.1371/journal.pone.0130163},
  pmid = {26075894}
}

@article{sakaguchi-2022-jpn-j-trauma-stress,
  title = {PTSDの恐怖記憶処理と新しい治療技術の開発},
  author = {坂口 昌徳} and {廣幡 小百合},
  journal = {トラウマティック・ストレス（Japanese Journal of Traumatic Stress）},
  year = {2022},
  volume = {20},
  number = {1},
  pages = {20--26},
  url = {https://cir.nii.ac.jp/crid/1520855665683704192}
}

@misc{sekiba-2025-medrxiv,
  title = {REM sleep rhythm impairment in people with PTSD},
  author = {Sekiba, H. and Hirohata, S. and Hori, A. and Suga, Y. and Toshishige, Y. and Vergara, P. and Masaki, M. and Tominaga, M. and Yanagisawa, M. and Kim, Y. and Sakaguchi, M.},
  howpublished = {medRxiv},
  year = {2025},
  doi = {10.1101/2025.07.02.25330609},
  url = {https://doi.org/10.1101/2025.07.02.25330609},
  note = {Preprint, not peer reviewed}
}

@article{soares-2021-cells,
  title = {Novel Galectin-3 Roles in Neurogenesis, Inflammation and Neurological Diseases},
  author = {Soares, L. C. and Al-Dalahmah, O. and Hillis, J. and Young, C. C. and Asbed, I. and Sakaguchi, M. and O’Neill, E. and Szele, F. G.},
  journal = {Cells},
  year = {2021},
  volume = {10},
  number = {11},
  pages = {3047},
  doi = {10.3390/cells10113047},
  url = {https://doi.org/10.3390/cells10113047},
  pmid = {34831271}
}

@article{srinivasan-2019-bbrc,
  title = {Miniaturized microscope with flexible light source input for neuronal imaging and manipulation in freely behaving animals},
  author = {Srinivasan, S. and Hosokawa, T. and Vergara, P. and Chérasse, Y. and Naoi, T. and Sakurai, T. and Sakaguchi, M.},
  journal = {Biochemical and Biophysical Research Communications},
  year = {2019},
  volume = {517},
  number = {3},
  pages = {520--524},
  doi = {10.1016/j.bbrc.2019.07.082},
  url = {https://doi.org/10.1016/j.bbrc.2019.07.082},
  pmid = {31376934}
}

@article{srinivasan-2025-nat-commun,
  title = {Transient reactivation of small ensembles of adult-born neurons during REM sleep supports memory consolidation in mice},
  author = {Srinivasan, S. and Koyanagi, I. and Vergara, P. and Wang, Y. and Ohba, A. and Naoi, T. and Vogt, K. E. and Chérasse, Y. and Kutsumura, N. and Sakurai, T. and Tezuka, T. and Sakaguchi, M.},
  journal = {Nature Communications},
  year = {2025},
  volume = {16},
  number = {1},
  pages = {7210},
  doi = {10.1038/s41467-025-62554-8},
  url = {https://doi.org/10.1038/s41467-025-62554-8},
  pmid = {40764488}
}

@article{stone-2011-hippocampus,
  title = {Functional convergence of developmentally and adult‐generated granule cells in dentate gyrus circuits supporting hippocampus‐dependent memory},
  author = {Stone, S. S. D. and Teixeira, C. M. and Zaslavsky, K. and Wheeler, A. L. and Martinez‐Canabal, A. and Wang, A. H. and Sakaguchi, M. and Lozano, A. M. and Frankland, P. W.},
  journal = {Hippocampus},
  year = {2010},
  volume = {21},
  number = {12},
  pages = {1348--1362},
  doi = {10.1002/hipo.20845},
  url = {https://doi.org/10.1002/hipo.20845},
  pmid = {20824726}
}

@inproceedings{taniguchi-2021-embc,
  title = {Open-Source Software for Real-time Calcium Imaging and Synchronized Neuron Firing Detection},
  author = {Taniguchi, M. and Tezuka, T. and Vergara, P. and Srinivasan, S. and Hosokawa, T. and Cherasse, Y. and Naoi, T. and Sakurai, T. and Sakaguchi, M.},
  booktitle = {2021 43rd Annual International Conference of the IEEE Engineering in Medicine \& Biology Society (EMBC)},
  year = {2021},
  pages = {2997--3003},
  doi = {10.1109/embc46164.2021.9629611},
  url = {https://doi.org/10.1109/embc46164.2021.9629611},
  pmid = {34891875}
}

@article{tezuka-2021-scirep,
  title = {Real-time, automatic, open-source sleep stage classification system using single EEG for mice},
  author = {Tezuka, T. and Kumar, D. and Singh, S. and Koyanagi, I. and Naoi, T. and Sakaguchi, M.},
  journal = {Scientific Reports},
  year = {2021},
  volume = {11},
  number = {1},
  pages = {11151},
  doi = {10.1038/s41598-021-90332-1},
  url = {https://doi.org/10.1038/s41598-021-90332-1},
  pmid = {34045518}
}

@article{vergara-2020-front-cell-neurosci,
  title = {Mechanisms Underlying Memory Consolidation by Adult-Born Neurons During Sleep},
  author = {Vergara, P. and Sakaguchi, M.},
  journal = {Frontiers in Cellular Neuroscience},
  year = {2020},
  volume = {14},
  pages = {594401},
  doi = {10.3389/fncel.2020.594401},
  url = {https://doi.org/10.3389/fncel.2020.594401},
  pmid = {33324167}
}

@article{vergara-2021-ijms,
  title = {Remapping of Adult-Born Neuron Activity during Fear Memory Consolidation in Mice},
  author = {Vergara, P. and Kumar, D. and Srinivasan, S. and Koyanagi, I. and Naoi, T. and Singh, S. and Sakaguchi, M.},
  journal = {International Journal of Molecular Sciences},
  year = {2021},
  volume = {22},
  number = {6},
  pages = {2874},
  doi = {10.3390/ijms22062874},
  url = {https://doi.org/10.3390/ijms22062874},
  pmid = {33808976}
}

@misc{vergara-2023-biorxiv,
  title = {CaliAli, a tool for long-term tracking of neuronal population dynamics in calcium imaging},
  author = {Vergara, P. and Wang, Y. and Srinivasan, S. and Cherasse, Y. and Naoi, T. and Sugaya, Y. and Sakurai, T. and Kano, M. and Sakaguchi, M.},
  howpublished = {bioRxiv},
  year = {2023},
  doi = {10.1101/2023.05.19.540935},
  url = {https://doi.org/10.1101/2023.05.19.540935},
  note = {Preprint, not peer reviewed}
}

@article{vergara-2025-natcommun,
  title = {A comprehensive suite for extracting neuron signals across multiple sessions in one-photon calcium imaging},
  author = {Vergara, P. and Wang, Y. and Srinivasan, S. and Dong, Z. and Feng, Y. and Koyanagi, I. and Kumar, D. and Chérasse, Y. and Naoi, T. and Sugaya, Y. and Sakurai, T. and Kano, M. and Shuman, T. and Cai, D. and Yanagisawa, M. and Sakaguchi, M.},
  journal = {Nature Communications},
  year = {2025},
  volume = {16},
  number = {1},
  pages = {3443},
  doi = {10.1038/s41467-025-58817-z},
  url = {https://doi.org/10.1038/s41467-025-58817-z},
  pmid = {40216771}
}

@misc{wang-2024-biorxiv,
  title = {T-scope V4: miniaturized microscope for optogenetic tagging in freely behaving animals},
  author = {Wang, Y. and Vergara, P. and Hasegawa, S. and Tomita, N. and Cherasse, Y. and Naoi, T. and Sakurai, T. and Sugaya, Y. and Kano, M. and Sakaguchi, M.},
  howpublished = {bioRxiv},
  year = {2024},
  doi = {10.1101/2024.10.07.616920},
  url = {https://doi.org/10.1101/2024.10.07.616920},
  note = {Preprint, not peer reviewed}
}

@article{yamane-2010-j-neurosci-res,
  title = {Transplantation of galectin‐1‐expressing human neural stem cells into the injured spinal cord of adult common marmosets},
  author = {Yamane, J. and Nakamura, M. and Iwanami, A. and Sakaguchi, M. and Katoh, H. and Yamada, M. and Momoshima, S. and Miyao, S. and Ishii, K. and Tamaoki, N. and Nomura, T. and Okano, H. J. and Kanemura, Y. and Toyama, Y. and Okano, H.},
  journal = {Journal of Neuroscience Research},
  year = {2010},
  volume = {88},
  number = {7},
  pages = {1394--1405},
  doi = {10.1002/jnr.22322},
  url = {https://doi.org/10.1002/jnr.22322},
  pmid = {20091712}
}

@article{yamane-2011-molbrain,
  title = {Transplantation of human neural stem/progenitor cells overexpressing galectin-1 improves functional recovery from focal brain ischemia in the mongolian gerbil},
  author = {Yamane, J. and Ishibashi, S. and Sakaguchi, M. and Kuroiwa, T. and Kanemura, Y. and Nakamura, M. and Miyoshi, H. and Sawamoto, K. and Toyama, Y. and Mizusawa, H. and Okano, H.},
  journal = {Molecular Brain},
  year = {2011},
  volume = {4},
  number = {1},
  pages = {35},
  doi = {10.1186/1756-6606-4-35},
  url = {https://doi.org/10.1186/1756-6606-4-35},
  pmid = {21951913}
}

@article{yamashita-2006-jneurosci,
  title = {Subventricular Zone-Derived Neuroblasts Migrate and Differentiate into Mature Neurons in the Post-Stroke Adult Striatum},
  author = {Yamashita, T. and Ninomiya, M. and Hernandez Acosta, P. and Garcia-Verdugo, J. M. and Sunabori, T. and Sakaguchi, M. and Adachi, K. and Kojima, T. and Hirota, Y. and Kawase, T. and Araki, N. and Abe, K. and Okano, H. and Sawamoto, K.},
  journal = {Journal of Neuroscience},
  year = {2006},
  volume = {26},
  number = {24},
  pages = {6627--6636},
  doi = {10.1523/JNEUROSCI.0149-06.2006},
  url = {https://doi.org/10.1523/JNEUROSCI.0149-06.2006},
  pmid = {16775151}
}

@article{yamauchi-2026-acm-trans-comput-healthc,
  title = {Development and Evaluation of an Auditory VR Generative System via Natural Language Interaction to Aid Exposure Therapy for PTSD Patients},
  author = {Yamauchi, Y. and Ino, K. and Sakaguchi, M. and Zempo, K.},
  journal = {ACM Transactions on Computing for Healthcare},
  year = {2026},
  volume = {7},
  number = {3},
  pages = {1--28},
  doi = {10.1145/3723048},
  url = {https://doi.org/10.1145/3723048}
}

@article{yu-2021-bbrc,
  title = {Fear generalization immediately after contextual fear memory consolidation in mice},
  author = {Yu, J. and Naoi, T. and Sakaguchi, M.},
  journal = {Biochemical and Biophysical Research Communications},
  year = {2021},
  volume = {558},
  pages = {102--106},
  doi = {10.1016/j.bbrc.2021.04.072},
  url = {https://doi.org/10.1016/j.bbrc.2021.04.072},
  pmid = {33906108}
}